PottersWheel Function Reference

The Application Programming Interface


PottersWheel 4.1.0, 2017-04-26 (512 interface functions)

Function details also available from command line: help FunctionName

To search for a function using a word appearing in the function help: pws keyword

All functions within a single file.

PottersWheel
pc
pe
pw
pwAdaptFitToLevelOfHistoryStorage
pwAdaptInstructions
pwAddA
pwAddC
pwAddCS
pwAddConstraint
pwAddData
pwAddDataFromDb
pwAddDataFromLibrary
pwAddDynamicalParameters
pwAddE
pwAddF
pwAddFunction
pwAddInstructions
pwAddK
pwAddModel
pwAddModelFromLibrary
pwAddModelsFromFolder
pwAddO
pwAddODE
pwAddObservations
pwAddP
pwAddParameterEquation
pwAddR
pwAddRepository
pwAddS
pwAddStartValues
pwAddTE
pwAddTimeEvent
pwAddU
pwAddV
pwAddX
pwAddY
pwAddZ
pwAnalysisOfFitsForDerivedParameters
pwAnalysisOfResiduals
pwAnalysisOfStandardDeviations
pwAppend
pwAppendFitHistoryOfRepository
pwArrange
pwArrangeAllOpenFigures
pwAutoResetQRNG
pwCalcFitGroupID
pwCalcHessianBasedTrajectoryCIs
pwCalculateConstraints
pwCalculateDerivedParameters
pwCalculateFitsOfAnalysis
pwCalculateResiduals
pwCharacteristicsOfSystemResponse
pwCheckForStiffness
pwCheckSystem
pwChoice
pwCleanUp
pwClear
pwClearFitHistory
pwCloseFigures
pwCombine
pwCompareFiles
pwCompareModelFileWithBackup
pwCompareReactionNetworks
pwCompareTrajectories
pwCompile
pwCompileFortranIntegrators
pwCompleteModel
pwConditionalSubplot
pwConfidenceIntervals
pwConfidenceIntervalsHessian
pwConfidenceIntervalsMonteCarlo
pwConfidenceIntervalsProfileLikelihood
pwConfigSearch
pwConfiguration
pwConnectNames
pwConvertCustomFormatToPW
pwConvertModelToCurrentVersion
pwConvertModelsToCurrentVersion
pwConvertSbmlFolderToPW
pwCopyCurrentAxesToFigA
pwCopyCurrentAxesToFigB
pwCopyCurrentAxesToFigC
pwCopyCurrentAxesToFigD
pwCopyDataFromLibrary
pwCopyModelFromLibrary
pwDataAndFits
pwDateEquals
pwDateLarger
pwDbAddDataToModel
pwDbAddExperiment
pwDbBrowser
pwDbCheckVersion
pwDbCloseDb
pwDbCreate
pwDbCreateTable
pwDbEditData
pwDbGetData
pwDbGetDataSet
pwDbGetExperiments
pwDbGetObservations
pwDbGetOriginalDataFilePath
pwDbGetStimulations
pwDbGetTableNames
pwDbGetTags
pwDbGetVersion
pwDbMigrate
pwDbOpenOriginalDataFile
pwDbRemoveExperiment
pwDbReplaceObservation
pwDbReplaceStimulation
pwDbSelectExperiment
pwDbSelectFile
pwDbSelectStimulations
pwDbSetConnection
pwDbTouch
pwDbVersion
pwDelete
pwDeleteFile
pwDeleteGlobalConfig
pwDeleteLocalConfig
pwDeleteModelDataConnections
pwDeleteOutliers
pwDeleteStimuli
pwDesigner
pwDesignerApplyCellDesignerLayout
pwDesignerApplyPottersWheelLayout
pwDesignerArrange
pwDesignerAutomaticAnchorPositions
pwDesignerAutomaticLayout
pwDesignerChangeNetworkSize
pwDesignerChangeSpeciesSize
pwDesignerCloseAll
pwDesignerGetLimits
pwDesignerHighlightSpecies
pwDesignerLengthOfReactionLines
pwDesignerNumberOfSpeciesOverlaps
pwDesignerOptimalSpeciesSize
pwDesignerOptimizePositions
pwDesignerRun
pwDesignerSavePngForEachSpecies
pwDesignerShapeOfSpeciesClass
pwDisturb
pwDisturbedParameters
pwDraw
pwDrivingInputTypeConversion
pwDuplicate
pwEdit
pwEnsureLocalMexFiles
pwEnsureValidConfig
pwEqualizer
pwExcelToTextFile
pwExperimentPlanning
pwExplodeSpecies
pwExploreFolder
pwExplorer
pwExportCouplesToLatex
pwExportCouplesToMatlab
pwExportCouplesToSBML
pwExportCouplesToTXT
pwExportModelToHTML
pwExportModelToSBML
pwExtractCellDesignerInformation
pwF1
pwF2
pwF3
pwF4
pwF5
pwFastIntegration
pwFastPlotting
pwFileIsAModel
pwFit
pwFitBoost
pwFitDeviation
pwFitDynamicParameters
pwFitHistory
pwFitHistoryAppendManualFit
pwFitHistoryClear
pwFitHistoryDeleteFits
pwFitHistoryDeleteFitsByIndex
pwFitHistoryGetFitGroups
pwFitHistoryGetFits
pwFitHistoryMergeFitSequences
pwFitScalingParameters
pwFitSequence
pwFitSequenceAnalysis
pwFitSequencePlots
pwFitSequenceResults
pwFitSettings
pwFitStartValues
pwFixParameters
pwForceTimeDependentView
pwForcedCompilation
pwFunctionReference
pwGet
pwGetAssemblyState
pwGetBestFit
pwGetCS
pwGetChisqAndN
pwGetChisqThreshold
pwGetConfig
pwGetConstraint
pwGetCurrentDataSet
pwGetCurrentDrivingFunction
pwGetDataSet
pwGetDefaultConfig
pwGetDrivingFunction
pwGetDrivingFunctionCont
pwGetDrivingFunctionPulse
pwGetDrivingFunctionsFromFile
pwGetEmptyModel
pwGetFigures
pwGetFitParameterValuesByID
pwGetFitParameters
pwGetFitsOfAnalysis
pwGetFitsOfCurrentSelectedCouple
pwGetFitsOfSelectedCouple
pwGetFixedParameters
pwGetInfluencedSpecies
pwGetIntegrator
pwGetIntegratorName
pwGetInvolvedSpecies
pwGetKDialog
pwGetListOfParameters
pwGetMatchingImportAdapter
pwGetModelElement
pwGetModelFilesInFolders
pwGetModelPlottingConfig
pwGetModelState
pwGetNeighbourSpecies
pwGetNumberOfCouples
pwGetNumberOfDataSets
pwGetNumberOfElements
pwGetNumberOfFittedCouples
pwGetNumberOfFittedDataPoints
pwGetNumberOfTrajectoryFigures
pwGetParameterValues
pwGetParameterValuesByID
pwGetPlottingData
pwGetPlottingData2
pwGetPlottingDataForStimDepView
pwGetQRNGIndex
pwGetRateSignature
pwGetReactionAutoID
pwGetRule
pwGetSelectedIndices
pwGetSelectedModel
pwGetSmallParsForFit
pwGetStimulusField
pwGetStoichiometricMatrix
pwGetStoredOptimizationJacobian
pwGetUDialog
pwGetValidID
pwGetValidVariableName
pwGoToToolboxFolder
pwGoodnessOfFit
pwGraph
pwGridSample
pwHalfLife
pwHalfLifeGUI
pwHomepage
pwIDSO
pwIncludeFileInRepository
pwInfo
pwInfoPlotsFitting
pwInitialize
pwInputDesigner
pwInputDesignerGUI
pwInputFunctionToString
pwInstall
pwInstallMultithreadingIntegrator
pwInstallSundialsTB
pwIntegrate
pwIntegrationTimeAlongFitTrajectory
pwIntegratorExists
pwLRT
pwLatinHyperCubeSample
pwLicense
pwLike
pwListK
pwLoadConfig
pwLoadConfigFromMFunction
pwLoadConfigFromMatFile
pwLoadFitsFromFile
pwLoadRepository
pwLogChangeFitParameter
pwMatch
pwMaxValues
pwMergeRepositories
pwMessage
pwMex
pwModelDefinitionGUI
pwModelDesigner
pwModelInfo
pwModelIntegrationSettingToString
pwModelOverview
pwModelStats
pwModelTablesGUI
pwModelsBrowser
pwMota
pwNewModel
pwODEsToReactions
pwOpenFile
pwOpenODE
pwOptimizationSetUserFunction
pwOptimizationUseUserFunction
pwOrderComplex
pwOrderComplexes
pwOverwrite
pwParseAndShow
pwPause
pwPlayRingIn
pwPlayTada
pwPle
pwPleCalculate
pwPleClear
pwPleCorrelationMatrix
pwPleDirectStep
pwPleFit
pwPleGetProfileLikelihoodData
pwPleInit
pwPlePlot
pwPlePlotRelations
pwPlePrint
pwPleProgressiveStep
pwPleSaveExtremeParameterSets
pwPleSearchOptimum
pwPleSetParsForFit
pwPleTrajectories
pwPlot
pwPlotExtremeSettings
pwPlotMultipleParameterSettings
pwPlotWithEnvelopes
pwPlottingAddGroup
pwPlottingLoadPlotSettings
pwPlottingSavePlotSettingsToFile
pwPlottingSetVisibleIDs
pwPlottingStorePlotSettings
pwPlugInMOTASaveResult
pwPrintf
pwPropertiesOfDataFile
pwQuasiRandomNumbersExtended
pwQuestion
pwRandomizedParameters
pwReactionToString
pwReduceFitHistorySize
pwReduceRepositorySize
pwReduceStimuli
pwRegexpRep
pwRegexpRepTester
pwRegisterImportAdapter
pwReleaseNotes
pwReload
pwReportAppendComments
pwReportAppendConfigurationSettings
pwReportAppendCoupleAndStimuliInfo
pwReportAppendGraphsAndReactions
pwReportAppendGraphsAndReactionsForSubnetworks
pwReportAppendLastStep
pwReportAppendObservables
pwReportClear
pwReportGUI
pwReportGenerate
pwReportNew
pwReportOnModelStructure
pwRepositoryBrowser
pwReset
pwResetOverwriteColor
pwRestoreOriginalData
pwRoot
pwRotate3DFigure
pwRunAllMacrosInFolder
pwSBML2PW
pwSQLiteBrowser
pwSaveAllOpenFigures
pwSaveConfigGlobally
pwSaveConfigLocally
pwSaveConfigToMFunction
pwSaveConfigToMatFile
pwSaveDataSetToFile
pwSaveDataSets
pwSaveDynamicalParameters
pwSaveFigures
pwSaveFiguresOfLastStep
pwSaveFiguresToHTML
pwSaveFitsToFile
pwSaveFrames
pwSaveFramesToAnimatedGif
pwSaveFramesToAvi
pwSaveInstructions
pwSaveModel
pwSaveModelKeepingCustomStructure
pwSaveModelKeepingCustomStructureOld
pwSaveOriginalDataFile
pwSaveOriginalModel
pwSaveParametersIntoModelFile
pwSavePlottingData
pwSaveRepository
pwSaveSelectedModelsWithFittedParValues
pwSaveStartValues
pwSaveState
pwSaveTrajectoriesToFile
pwScale
pwScaleAndMergeDataSets
pwScatterPlots
pwSearch
pwSearchInFolder
pwSelect
pwSelectDataFile
pwSelectModelFile
pwSensitivityAddPair
pwSensitivityAnalysis1D
pwSensitivityAnalysis2D
pwSensitivityAnalysis3D
pwSensitivityAnalysisDetailed
pwSensitivityAnalysisDetailedGUI
pwSet
pwSetConfig
pwSetCurrentDataSet
pwSetCurrentDrivingFunction
pwSetEnvelopesByHessianCIs
pwSetEnvelopesByParameterValues
pwSetEnvelopesByParameterVariations
pwSetErrorLevel
pwSetFitLimitsAroundCurrentValues
pwSetFitLimitsAroundTrueValues
pwSetFitParameterValuesByID
pwSetFitParsAndIntegrate
pwSetFitSettings
pwSetFitsOfAnalysis
pwSetFittedK
pwSetFittedS
pwSetFittedX
pwSetFixedParameters
pwSetIntegrationOptions
pwSetIntegrationStartTime
pwSetIntegrator
pwSetLogFitting
pwSetModelPlottingConfig
pwSetModelSpeciesVisibility
pwSetNFine
pwSetOptimizationWeights
pwSetOptimizer
pwSetParameterValuesByID
pwSetParsForFitToDefaultValues
pwSetPlotStartTime
pwSetPlottingState
pwSetPlottingUserFunction
pwSetQRNGIndex
pwSetReferencesFile
pwSetResetValues
pwSetStimulusDependentView
pwSetStimulusField
pwSetTimeTransformation
pwSetUsedDataSet
pwSetX
pwSetY
pwShortcut
pwShowChisqLandscape
pwShowChisqLandscape3D
pwShowDataFromLibrary
pwShowFigure
pwShowFigures
pwShowFitting
pwShowGraph
pwShowGraphAsPNG
pwShowGraphForSubnetwork
pwShowHelp
pwShowLastError
pwShowModelsFromLibrary
pwShowODE
pwShowShortcuts
pwShowWindowsPath
pwSim
pwSimpleToValidRegExp
pwSimulateNewRealization
pwSlide
pwSortFits
pwSplitStimuli
pwSqlConnectionIsOpen
pwSqlConnectionStatus
pwSqlSettings
pwStochasticSimulation
pwSubtractAllY
pwSubtractK
pwSubtractR
pwSubtractU
pwSubtractX
pwSubtractY
pwSubtractZ
pwTestRandomNumberGenerator
pwThresholdCrossing
pwTouch
pwTrajectoriesOfManyInputSettings
pwTrajectoriesOfManyParameterSettings
pwTutorial_ODE_based_models
pwTutorial_Rule_based_modeling
pwTutorial_Using_the_Parallel_Computing_Toolbox
pwUnselect
pwUpdateModelLibrary
pwUpdateRepository
pwUseCurrentParametersAsResetParameters
pwUseDataSetSettingsForSim
pwUseFitOfLastFitSequence
pwUserFunctionFitSum
pwUserFunctionPlotSum
pwValuesAtTimePoint
pwWaitbar
pwWaitbarClose
pwWaitbarCloseAll
pwWaitbarOpen
pws